Schizosaccharomyces pombe GeneDB

GeneDB S. pombe will be decommissioned shortly, and replaced by the new PomBase. Please try the new resource, and provide feedback if you find any problems or missing functionality.

This database contains all S. pombe (fission yeast) known and predicted protein coding genes, pseudogenes, transposons, tRNAs, rRNAs, snRNAs, snoRNAs and other known and predicted non-coding RNAs. Curation of new and existing literature is ongoing and changes are incorporated weekly. User feedback is welcome. Please send updates, comments and corrections to help us improve the resource using the feedback forms on each gene page.
Database Entry Point
gene by ID/description Include description Add wildcards	Searches/Analysis omniBLAST BLAST Motif Search AmiGO List Download Cross-Organism Search Page Complex/Boolean Query	Browse Catalogues Products Curation SWISS-PROT Keywords Pfam Genome Browser Contig/Chromosome Maps
Information		Genome News
S. pombe Project Page	Download sequence annotation, manuals, reports and abstract books and access genome statistics, sequencing status and links to related sites.	November 28th 2011 A preview of PomBase, the new model organism database for the fission yeast Schizosaccharomyces pombe, has been announced to the S. pombe community for testing and feedback. For more on PomBase, see the NAR Database Issue paper (PubMed abstract) or contact the PomBase staff. April 2011 GeneDB (S. pombe) now uses the latest release of the Pfam protein family database(25.0). April 22nd 2011 A paper describing the major findings of the Schizosaccharomyces Comparative Genome Project was published today in Science Express and reported changes are included in GeneDB. more, more. February 2011 Genome reappraisal reveals new genes and revised gene structures, more. February 2011 Annotated transcription start and termination sites more. May 2010 The analysis of the fission yeast deletion collection is now published online in Nature Biotechnology. Previous news items
Gene Name Registry	Register gene names pre-publication
Mailing list (pombelist)	Subscribe\|Archive
Mailing list (yeast orthologous groups)	Subscribe

Example Genes
Shortcuts to frequently requested gene lists
Characterised genes	tea1 mis6 dad1 sid2
Inferred function	taf9 trm12 gpi10
Conserved hypothetical	SPCC191.08 SPCC4B3.13
Sequence orphans	SPCC594.07c SPCC70.10

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