Theileria annulata

February 2005 Release of the chromosomal contigs with updated manual annotation

Further assembly into contigs has allowed chromosomal assignations to be made. Chromosome 1 is in 4 contigs, all other chromosomes in single contigs.

The colour and appellation codes for the gene models remain as for the September 2003 release.

September 2003 Release of the contigs sequences and manual annotation

All the gene models were manually screened based on a combination of results from GeneFinder and Phat gene-prediction software, from FASTA and BLAST similarity searches against publicly available databases, from GC-profile analysis scoring and from BLAST results against a T. annulata EST database. They were then tentatively categorized according with that particular gene and its predicted protein product.

The following colour and appellation codes were adopted:

red

Theileria gene previously submitted to public databases (eg Spm1)

pink

Theileria gene-family products previously submitted to public databases (eg, SfiI-subtelomeric fragment related protein)

yellow

Theileria annulata gene product homologous to protein of predicted or well-characterized function (eg histone H3, putative)

orange

homologue to a hypothetical protein (coined hypothetical protein, conserved)

green

no homologues available in public databases (coined hypothetical protein)

Once contigs have been assembled, and a chromosome assigned to the assembly, the annotation will be transferred.

Please note that manual annotation is still ongoing.

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