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CDS: SPBC1703.01c

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General Information   Add to Gene Basket  View Gene Basket
Systematic NameSPBC1703.01c
Gene SynonymsSPBP4H10.22c 
Status role inferred from homology
Product RNase P and RNase MRP subunit (predicted)    
TypeCDS
Sequence DNA and Protein
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Location
Chromosome 2
Contig Location complement(2914870..2915595)   (Unspliced length: 726 bp)
Exons complement(join(2914870..2915018 , 2915091..2915595))   (Spliced length: 654 bp)
Region download and display (in Artemis) Genome Browser
Context Map:
Context Feature Map

SPBP4H10.15  SPBP4H10.16c  SPBP4H10.17c  SPBP4H10.18c  SPBP4H10.19c  nhm1  sld5  >SPBC1703.01c<  rsc9  SPBC1703.03c  mlh1  SPBC1703.05  pof10  
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Curation
Term Other genes annotated to this term
orthologous to S. cerevisiae YBR257W(0 Others)
conserved in Eukaryotes(4113 Others)
conserved in Metazoa(3558 Others)
conserved in Vertebrates(3556 Others)
conserved in Fungi(4163 Others)
conserved in Eukaryotes only(2461 Others)
predominantly uniformly single copy (one to one)(2867 Others)
 
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Predicted Peptide Properties
Mass
24.6 kDa Amino acids 217
pH 10.6 Charge 20.5
Isoelectric point
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Signal PeptideNot found
Transmembrane Domains0 found
GPI AnchorNot found
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Gene Ontology Annotation
Term (browse Amigo) Qualifier Evidence Other genes annotated to this term
Biological Process
mRNA cleavage  IEA (GO_REF:0000002) with InterPro:IPR002730 18 others
rRNA processing  ISS (PMID:17072883) with SGD:S000000461 164 others
tRNA processing  ISS (PMID:17072883) with SGD:S000000461 84 others
Cellular Component
nucleolar ribonuclease P complex  ISS (PMID:17072883) with SGD:S000000461 8 others
nucleolus  IDA (PMID:16823372) 336 others
ribonuclease MRP complex  ISS (PMID:17072883) with SGD:S000000461 8 others
Molecular Function
RNA binding  IEA (GO_REF:0000002) with InterPro:IPR016848 550 others
ribonuclease MRP activity function of complexISS (PMID:17072883) with SGD:S000000461 5 others
ribonuclease P activity function of complexISS (PMID:17072883) with SGD:S000000461 7 others
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Catalytic Activity
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Published Expression Profiles
Gene Expression Viewer Cell Cycle
Gene Expression Viewer Meiosis
Gene Expression Viewer Environmental Stress
Gene Expression Viewer Pheromone Response/Mating
TranscriptomeViewer      SPBC1703.01c High-resolution view of transcripts in neighbourhood
Array Express                   SPBC1703.01c Array Express Expression profiles
Cyclebase                          SPBC1703.01c Cell Cycle Expression Datasets
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Literature
Search for in PubMed
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Protein Families and Domains
View Pfam domain structure for this gene product
View SCOP superfamily
DB Accs Description
PfamPF01868Domain of unknown function UPF0086 (0 Others)
InterProIPR002730Ribonuclease P/MRP, p29 subunit, eukaryotic/archaeal
ProDomPD009163ProDom
SMARTSM00538SMART
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Database Cross-References
DB Accs Description
UniProtKBQ9P7W9Probable ribonuclease P protein subunit 1 (EC 3.1.26.5).
EMBLAL136536Schizosaccharomyces pombe chromosome II
EMBLAL162692Schizosaccharomyces pombe chromosome II
BioGridSPBC1703.01ccurated genetic and physical interactions
EnsemblSPBC1703.01cEnsembl Fungi
NCBI Entrez GeneSPBC1703.01cNCBI Entrez Gene
FYSSIONSPBC1703.01cFYSSION
NBRPSPBC1703.01cFission yeast strain database, National BioResource Project (Japan)
PIRT50314PIR
SPD50/50B11S. pombe Postgenome Database Orfeome Localization Data
YOGYSPBC1703.01cRetrieval of eukaryotic orthologs
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UniProtKB Annotation For This Protein
Catalytic ActivityEndonucleolytic cleavage of RNA, removing 5'- extranucleotides from tRNA precursor.
Function Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends (By similarity).
SimilarityBelongs to the eukaryotic/archaeal RNase P protein component 1 family.
Subcellular LocationNucleus (Potential).
Keywords Complete proteome  (4977 others) ,   Hydrolase  (451 others) ,   Nucleus  (1206 others) ,   tRNA processing  (37 others)
 
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